PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016102.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 270aa    MW: 29743.6 Da    PI: 5.1633
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016102.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-3082140259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY+ eHnh+
  Pbr016102.1  82 SDPWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMLVITYSAEHNHP 140
                  699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-3174142IPR003657WRKY domain
PROSITE profilePS5081132.48976142IPR003657WRKY domain
SuperFamilySSF1182903.4E-2677142IPR003657WRKY domain
SMARTSM007748.7E-3681141IPR003657WRKY domain
PfamPF031061.0E-2583140IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDPTFFSSNS KQIMSDQEEN DNTTSSTPEN SSDSPPPSTN FSDYSKITTS TSSPKKSARR  60
AIQKRVVSVP IKNENSNTPP PSDPWAWRKY GQKPIKGSPY PRGYYRCSSS KGCPARKQVE  120
RSRVDPTMLV ITYSAEHNHP WPASRNHHNN RSISIPAAGT KPGLTPEAQQ PDHQDQEQDP  180
RFADLNHESL LVNDDYVWFA DMETTSSTVL ESPIFAESGG SVGSDSGDMA AMVFPMGEED  240
ESLFADLGEL PEYSLVFRHR GVGPQAQIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-19821421574WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU5768740.0GU576874.1 Malus hupehensis WRKY transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352729.10.0PREDICTED: probable WRKY transcription factor 65
SwissprotQ9LP562e-77WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLD9ZJF41e-171D9ZJF4_MALDO; WRKY domain class transcription factor
STRINGPOPTR_0011s06990.13e-88(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.18e-74WRKY DNA-binding protein 65